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Topic: Genomics

Results

DNA Sequence Compression Using Adaptive Particle Swarm Optimization-Based Memetic Algorithm

2011 / IEEE
By: Yu-Hui Shi; Zhen Ji; Jiarui Zhou; Zexuan Zhu;

GOrevenge: A Novel Generic Reverse Engineering Method for the Identification of Critical Molecular Players, Through the Use of Ontologies

2011 / IEEE
By: Moutselos, K.; Chatziioannou, A.; Maglogiannis, I.;

The iPlant Collaborative: Cyberinfrastructure to Feed the World

2011 / IEEE
By: Stanzione, D.;

Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes

2011 / IEEE
By: Saltz, J.H.; Moreno, C.S.; Kurc, T.M.; Van Meir, E.G.; Pan, T.; Sharma, A.; Brat, D.J.; Jingjing Gao; Gutman, D.A.; Fusheng Wang; Cooper, L.A.D.; Jun Kong; Chisolm, C.;

Sequence Surveyor: Leveraging Overview for Scalable Genomic Alignment Visualization

2011 / IEEE
By: Gleicher, M.; Dewey, C.; Albers, D.;

Engineering Tissue with BioMEMS

2011 / IEEE
By: Vunjak-Novakovic, G.; Borenstein, J.T.;

Comparative Analysis of Genomic Signal Processing for Microarray Data Clustering

2011 / IEEE
By: Sungoor, A.; Istepanian, R.S.H.; Nebel, J.-C.;

Robust Smoothing of Quantitative Genomic Data Using Second-Generation Wavelets and Bivariate Shrinkage

2012 / IEEE
By: Hatsuda, H.;

A Systems Biology Approach to Solving the Puzzle of Unknown Genomic Gene-Function Association Using Grid-Ready SVM Committee Machines

2012 / IEEE
By: Lee, T.-L.M.; Jung-Hsien Chiang;

¿¿Enhanced Encoding with Improved Fuzzy Decision Tree Testing Using CASP Templates

2012 / IEEE
By: Yan-Qing Zhang; Chida, A.; Harrison, R.;

Sorting of Permutations by Cost-Constrained Transpositions

2012 / IEEE
By: Farnoud, F.; Milenkovic, O.;

Brain-Like Emergent Spatial Processing

2012 / IEEE
By: Luciw, M.; Juyang Weng;

Redesigning Viral Genomes

2012 / IEEE
By: Skiena, S.S.;

Algorithms and Genome Sequencing: Identifying Driver Pathways in Cancer

2012 / IEEE
By: Vandin, F.; Raphael, B.; Upfal, E.;

Investigation on Cardiovascular Risk Prediction Using Genetic Information

2012 / IEEE
By: Li-Na Pu; Yuan-Ting Zhang; Ze Zhao;

Cardiovascular Genomics: A Biomarker Identification Pipeline

2012 / IEEE
By: Quo, C.F.; Phan, J.H.; Wang, M.D.;

Studies on the Physical Characteristics of the Radio-Frequency Atmospheric-Pressure Glow Discharge Plasmas for the Genome Mutation of Methylosinus trichosporium

2012 / IEEE
By: Hao Wu; He-Ping Li; Pei-Si Le; Nan Ge; Zhi-Bin Wang; Yuan Lu; Xin-Hui Xing; Cheng-Yu Bao; Chong Zhang; Li-Yan Wang;

Evolution of Bioengineering at UCSD: Opening New Vistas

2012 / IEEE
By: Subramaniam, S.;

Science in the Cloud: Accelerating Discovery in the 21st Century

2012 / IEEE
By: Konerding, D.E.; Kohlhoff, K.J.; Hellerstein, J.L.;

Bioinformatics Applications in Genomics

2012 / IEEE
By: Wing-Kin Sung;

Learning Character Strings via Mastermind Queries, With a Case Study Involving mtDNA

2012 / IEEE
By: Goodrich, M.T.;

Multiscale Integration of -Omic, Imaging, and Clinical Data in Biomedical Informatics

2012 / IEEE
By: Quo, C.F.; Phan, J.H.; Wang, M.D.; Cheng, C.;

Secure Management of Biomedical Data With Cryptographic Hardware

2012 / IEEE
By: Canim, M.; Malin, B.; Kantarcioglu, M.;

Data Mining Over Biological Datasets: An Integrated Approach Based on Computational Intelligence

2012 / IEEE
By: Milone, D.H.; Gerard, M.; Stegmayer, G.;

The Effects of Constant and Bit-Wise Neutrality on Problem Hardness, Fitness Distance Correlation and Phenotypic Mutation Rates

2012 / IEEE
By: Poli, R.; Galvan-Lopez, E.;

Multiparametric Decision Support System for the Prediction of Oral Cancer Reoccurrence

2012 / IEEE
By: Goletsis, Y.; Exarchos, K.P.; Fotiadis, D.I.;

Grammatical Evolution of Local Search Heuristics

2012 / IEEE
By: Hyde, M.R.; Burke, E.K.; Kendall, G.;

A Framework for Scalable Genome Assembly on Clusters, Clouds, and Grids

2012 / IEEE
By: Thrasher, A.; Moretti, C.; Thain, D.; Emrich, S.; Olson, M.; Li Yu;

Relevant and Significant Supervised Gene Clusters for Microarray Cancer Classification

2012 / IEEE
By: Das, C.; Maji, P.;

Correlation of Genomic Features With Dynamic Modularity in the Yeast Interactome: A View From the Structural Perspective

2012 / IEEE
By: Huiru Zheng; Haiying Wang;

SNP Selection and Classification of Genome-Wide SNP Data Using Stratified Sampling Random Forests

2012 / IEEE
By: Yunming Ye; Qingyao Wu; Ng, M.K.; Yang Liu;

Signal Processing in Genomics and Proteomics: Defining Its Role [From the Guest Editors]

2012 / IEEE
By: Klein-Seetharaman, J.; Dimitrova, N.; Tewfik, A.H.; Beyerlein, P.;

High-Dimensional Longitudinal Genomic Data: An analysis used for monitoring viral infections

2012 / IEEE
By: Dunson, D.; Ginsburg, G.S.; Lucas, J.; Hero, A.; Carin, L.; Minhua Chen; Woods, C.W.; Zaas, A.; Tibau-Piug, A.; Henao, R.;

Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform and Wavelet Tree

2012 / IEEE
By: Vitter, J.S.; Kulekci, M.O.; Bojian Xu;

Time Series Dependent Analysis of Unparametrized Thomas Networks

2012 / IEEE
By: Klarner, H.; Bockmayr, A.; Siebert, H.;

The GA and the GWAS: Using Genetic Algorithms to Search for Multilocus Associations

2012 / IEEE
By: Wilmot, B.; Mooney, M.A.; McWeeney, S.K.;

An Efficient Alignment Algorithm for Searching Simple Pseudoknots over Long Genomic Sequence

2012 / IEEE
By: Hon, W.K.; Lam, T.W.; Wong, T.K.F.; Ma, C.; Yiu, S.M.; Sadakane, K.;

Sequence-Based Prediction of DNA-Binding Residues in Proteins with Conservation and Correlation Information

2012 / IEEE
By: Jing Guo; Xin Ma; Xiao Sun; Jian-Ming Xie; Hong-De Liu;

Gene Selection Using Iterative Feature Elimination Random Forests for Survival Outcomes

2012 / IEEE
By: Tiejun Tong; Hui, K.; George, S.L.; Pang, H.;

SC³: Triple Spectral Clustering-Based Consensus Clustering Framework for Class Discovery from Cancer Gene Expression Profiles

2012 / IEEE
By: Zhiwen Yu; Guoqiang Han; Hau-San Wong; You, J.; Le Li;

Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform

2012 / IEEE
By: Dominguez, A.T.; Espert, I.B.; Torres, J.S.; Blazquez, J.D.; Gimenez, J.T.; Castello, I.M.; Garcia, V.H.;

Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model

2012 / IEEE
By: Dao-Qing Dai; Xiao-Fei Zhang; Xiao-Xin Li;

Multiscale Denoising of Biological Data: A Comparative Analysis

2012 / IEEE
By: Meskin, N.; Nounou, H.N.; Nounou, M.N.; Dougherty, E.R.; Datta, A.;

In Silico Search of DNA Drugs Targeting Oncogenes

2012 / IEEE
By: Gizeli, E.; Papadakis, G.;

Scaffold Filling under the Breakpoint and Related Distances

2012 / IEEE
By: Chunfang Zheng; Haitao Jiang; Binhai Zhu; Sankoff, D.;

Detecting Phenotype-Specific Interactions between Biological Processes from Microarray Data and Annotations

2012 / IEEE
By: Voichita, C.; Bao, R.; Ansari, N.A.; Draghici, S.;

Fuzzy Intervention in Biological Phenomena

2012 / IEEE
By: Nounou, H.N.; Dougherty, E.R.; Datta, A.; Meskin, N.; Nounou, M.N.;

Output-Sensitive Algorithms for Finding the Nested Common Intervals of Two General Sequences

2012 / IEEE
By: Biing-Feng Wang;

The Kernel of Maximum Agreement Subtrees

2012 / IEEE
By: Sankoff, D.; Pattengale, N.D.; Chen, E.; Swenson, K.M.;

A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences

2012 / IEEE
By: Steinbiss, S.; Kurtz, S.;

A Hybrid Approach to Survival Model Building Using Integration of Clinical and Molecular Information in Censored Data

2012 / IEEE
By: Kattan, M.W.; Ickwon Choi; Changhong Yu; Wells, B.J.;

A Novel Method to Select Informative SNPs and Their Application in Genetic Association Studies

2012 / IEEE
By: Wen Zhu; Xiong Li; Bo Liao; Zhi Cao;

Eigen-Genomic System Dynamic-Pattern Analysis (ESDA): Modeling mRNA Degradation and Self-Regulation

2012 / IEEE
By: Markey, M.K.; Daifeng Wang; Arapostathis, A.; Wilke, C.O.;

BpMatch: An Efficient Algorithm for a Segmental Analysis of Genomic Sequences

2012 / IEEE
By: Marangoni, R.; Felicioli, C.;

A New Measure of Classifier Performance for Gene Expression Data

2012 / IEEE
By: Hanczar, B.; Bar-Hen, A.;

KungFQ: A Simple and Powerful Approach to Compress fastq Files

2012 / IEEE
By: Grassi, E.; Gregorio, F.D.; Molineris, I.;

CEDER: Accurate Detection of Differentially Expressed Genes by Combining Significance of Exons Using RNA-Seq

2012 / IEEE
By: Lin Wan; Fengzhu Sun;

The Impact of Normalization and Phylogenetic Information on Estimating the Distance for Metagenomes

2012 / IEEE
By: Daryi Wang; Cheng-Yan Kao; Weng, F.C.-H.; Ming-Tsung Hsu; Tse-Yi Wang; Chien-Hao Su; Huai-Kuang Tsai;

Genomic Signal Processing [Life Sciences]

2012 / IEEE
By: Dougherty, E.R.;

Distinguishing Endogenous Retroviral LTRs from SINE Elements Using Features Extracted from Evolved Side Effect Machines

2012 / IEEE
By: Ashlock, W.; Datta, S.;

Robust Approaches for Genetic Regulatory Network Modeling and Intervention: A review of recent advances

2012 / IEEE
By: Bhattacharya, S.; Pal, R.; Caglar, M.U.;

Detecting Changes in DNA Copy Number: Reviewing signal processing techniques

2012 / IEEE
By: Pique-Regi, R.; Ortega, A.; Tewfik, A.; Asgharzadeh, S.;

Computational Prediction of Important Regions in Protein Sequences [Life Sciences]

2012 / IEEE
By: Pietrosemoli, N.; Pazos, F.; Segura-Cabrera, A.; Lopez, D.;

Large-Scale Signaling Network Reconstruction

2012 / IEEE
By: Hashemikhabir, S.; Kahveci, T.; Can, T.; Kavurucu, Y.; Ayaz, E.S.;

Developing Algorithms to Discover Novel Cancer Genes: A look at the challenges and approaches

2012 / IEEE
By: Getz, G.; Mermel, C.; Saksena, G.;

Graphical Models and Inference on Graphs in Genomics: Challenges of high-throughput data analysis

2012 / IEEE
By: Shamaiah, M.; Vikalo, H.; Sang Hyun Lee;

How Little Do We Actually Know? On the Size of Gene Regulatory Networks

2012 / IEEE
By: Taubert, J.; Ruckert, U.; Rottger, R.; Baumbach, J.;

The Integration of Biological Pathway Knowledge in Cancer Genomics: A review of existing computational approaches

2012 / IEEE
By: Mittal, P.; Varadan, V.; Benz, S.C.; Vaske, C.J.;

Improving the Prediction of Clinical Outcomes from Genomic Data Using Multiresolution Analysis

2012 / IEEE
By: Cooper, G.F.; Hennings-Yeomans, P.H.;

Comparative Analysis of Biological Networks: Hidden Markov model and Markov chain-based approach

2012 / IEEE
By: Sahraeian, S.M.E.; Xiaoning Qian; Byung-Jun Yoon;

Understanding MicroRNA Regulation: A computational perspective

2012 / IEEE
By: Jia Meng; Dong Yue; Yufei Huang; Maozu Guo; Chen, C.L.P.; Mingzhu Lu;

Base Station Placement Optimization Algorithm for Heterogeneous Distributions of Mobile Users with Multi-Service Requirements

2012 / IEEE
By: Soto, C.; Villarreal, S.; Covarrubias, D.H.;

A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information

2012 / IEEE
By: Vedova, G.D.; Pirola, Y.; Bonizzoni, P.; Stella, A.; Biffani, S.;

Evaluation of Telerobotic Shared Control Strategy for Efficient Single-Cell Manipulation

2012 / IEEE
By: Jung Kim; Ferreira, A.; Folio, D.; Ladjal, H.; Jungsik Kim;

A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms

2012 / IEEE
By: Dao-Qing Dai; Xiao-Fei Zhang;

Designing Filters for Fast-Known NcRNA Identification

2012 / IEEE
By: Cheng Yuan; Buhler, J.; Yanni Sun;

Large-Scale Orthology Predictions for Inferring Gene Functions across Multiple Species

2010 / IEEE / 978-1-61284-986-7
By: Desai, V.; Chenggang Yu; Reifman, J.; Zavaljevski, N.;

Biologically inspired informatics; algorithm for logical data processing

2011 / IEEE / 978-1-4577-1806-9
By: Korondi, P.; Piros, S.J.;

Piezo-powered Micro-dissection system with ultrasonic vibration

2011 / IEEE / 978-988-17255-9-2
By: Chen Liguo; Sun Lining; Liu Yaxin;

Optimization of routing and gateway allocation in aeronautical ad hoc networks using genetic algorithms

2011 / IEEE / 978-1-4244-9538-2
By: Hoffmann, F.; Wolisz, A.; Medina, D.;

Simultaneous Identification for Synergistic Transcription Factors and their Transcription Factor Binding Sites

2011 / IEEE / 978-1-61284-709-2
By: Huang, G.T.-W.; Zing Tsung-Yeh Tsai; Huai-Kuang Tsai;

Multiscale SSR Tag Cloud Visualization for Biomarker Discovery

2011 / IEEE / 978-1-61284-709-2
By: Chien Ming Chen; Jhen Li Huang; Ronshan Cheng; Liang Wei Zeng; Tun-Wen Pai;

Challenges in microarray data management and analysis

2011 / IEEE / 978-1-4577-1190-9
By: Guzzi, P.H.; Cannataro, M.;

Template-based semi-automatic workflow construction for gene expression data analysis

2011 / IEEE / 978-1-4577-1190-9
By: Belohradsky, J.; Garino, C.G.; Holec, M.; Zelezny, F.; Monge, D.;

Optimisation and parallelisation of the partitioning around medoids function in R

2011 / IEEE / 978-1-61284-383-4
By: Sloan, T.M.; Piotrowski, M.; Hill, J.; Trew, A.; Ghazal, P.; Dobrezelecki, B.; Petrou, S.; Mitchell, L.; Forster, T.; Mewsissen, M.;

HPCS 2011 keynotes: Tuesday keynote I: High-performance computing and biology: The quest for a predictive biological theory

2011 / IEEE / 978-1-61284-383-4
By: Stevens, R.L.;

Synthesis of Boolean networks via semi-tensor product

2011 / IEEE / 978-988-17255-9-2
By: Qi Hongsheng; Cheng Daizhan; Zhao Yin;

Unifying probe effect and array effect to detect transcribed fragments in tiling arrays

2011 / IEEE / 978-988-17255-9-2
By: Jia Yingmin; Gao Qinghui; Yu Fashan; Cheng Changfang;

A KTAP framework of DNA damage repair mechanism under Ion Radiation (IR) perturbation

2011 / IEEE / 978-988-17255-9-2
By: Qi Jinpeng; Han Fang; Ding Yongsheng;

Maximum-clique algorithm: An effective method to mine large-scale co-expressed genes in Arabidopsis anther

2011 / IEEE / 978-988-17255-9-2
By: Jiao Qing-Ju; Shen Hong-Bin;

Hierarchical Bayesian classifiers optimized towards handwritten digit recognition

2011 / IEEE / 978-1-4244-9312-8
By: Pauplin, O.; Jianmin Jiang;

Pathway-based gene selection for disease classification

2011 / IEEE / 978-0-9564263-8-3
By: Cawthorne, M.A.; Jassim, S.; Ibrahim, M.A.-H.; Langlands, K.;

Dot plot analysis of alpha satellite DNA

2011 / IEEE / 978-1-61284-943-0
By: Voina, A.; Pop, P.G.;

Application of random hierarchical clustering in metabolic networks

2011 / IEEE / 978-988-17255-9-2
By: Ding Dewu;

A noise reducing sampling approach for uncovering critical properties in large scale biological networks

2011 / IEEE / 978-1-61284-383-4
By: Ali, H.; Dempsey, K.; Duraisamy, K.; Bhowmick, S.;

Viral Systems Application for Knapsack Problem

2011 / IEEE / 978-1-4577-0975-3
By: Kartika, E.K.; Suryadi, D.;

An Efficient and Scalable Implementation of SNP-Pair Interaction Testing for Genetic Association Studies

2011 / IEEE / 978-1-61284-425-1
By: Koesterke, L.; Schnable, P.S.; Nettleton, D.; Cheng-Ting Yeh; Vaughn, M.; Jinliang Yang; Kusnierczyk, W.; Welch, S.M.; Stanzione, D.;

Neural Network application in diagnosis of patient: A case study

2011 / IEEE / 978-1-61284-941-6
By: Khalifelu, Z.A.; Gharehchopogh, F.S.;

On Intact and Inparanoid

2011 / IEEE / 978-1-61284-486-2
By: Shanshan Zhu; Hui Lin; Fei Zhu;

A comparative study of feature ranking methods as dimension reduction technique in Genome-Wide Association Study

2011 / IEEE / 978-1-4577-0752-0
By: Ayuningtyas, C.H.; Mengko, T.L.E.R.; Saptawati, G.A.P.;

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Topic: Genomics

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